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Indexed journals

Pereira-García, C., del Amo, E. H., Vigués, N., Rey-Velasco, X., Rincón-Tomás, B., Pérez-Cruz, C., Sanz-Sáez, I., Hu, H., Bertilsson, S., Pannier, A., Soltmann, U., Sánchez, P., Acinas, S. G., Bravo, A. G., Alonso-Sáez, L., & Sánchez, O. (2024). Unmasking the physiology of mercury detoxifying bacteria from polluted sediments. Journal of Hazardous Materials, 467, 133685.
Rincón-Tomás, B., Lanzén, A., Sánchez, P., Estupiñán, M., Sanz-Sáez, I., Bilbao, M. E., Rojo, D., Mendibil, I., Pérez-Cruz, C., Ferri, M., Capo, E., Abad-Recio, I. L., Amouroux, D., Bertilsson, S., Sánchez, O., Acinas, S. G., & Alonso-Sáez, L. (2024). Revisiting the mercury cycle in marine sediments: A potential multifaceted role for Desulfobacterota. Journal of Hazardous Materials, 465, 133120.
Sánchez, P., Coutinho, F. H., Sebastián, M., Pernice, M. C., Rodríguez-Martínez, R., Salazar, G., Cornejo-Castillo, F. M., Pesant, S., López-Alforja, X., López-García, E. M., Agustí, S., Gojobori, T., Logares, R., Sala, M. M., Vaqué, D., Massana, R., Duarte, C. M., Acinas, S. G., & Gasol, J. M. (2024). Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. Scientific Data, 11(1), Article 1.
Sanz-Sáez, I., Sánchez, P., Salazar, G., Sunagawa, S., de Vargas, C., Bowler, C., Sullivan, M. B., Wincker, P., Karsenti, E., Pedrós-Alió, C., Agustí, S., Gojobori, T., Duarte, C. M., Gasol, J. M., Sánchez, O., & Acinas, S. G. (2023). Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation. ISME Communications, 3(1), Article 1.
Sebastián, M., Sánchez, P., Salazar, G., Álvarez-Salgado, X. A., Reche, I., Morán, X. A. G., Sala, M. M., Duarte, C. M., Acinas, S. G., & Gasol, J. M. (2024). Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome. Limnology and Oceanography, 69(3), 562-575.
Capo, E., Peterson, B. D., Kim, M., Jones, D. S., Acinas, S. G., Amyot, M., Bertilsson, S., Björn, E., Buck, M., Cosio, C., Elias, D. A., Gilmour, C., Goñi-Urriza, M., Gu, B., Lin, H., Liu, Y.-R., McMahon, K., Moreau, J. W., Pinhassi, J., … Gionfriddo, C. M. (2023). A consensus protocol for the recovery of mercury methylation genes from metagenomes. Molecular Ecology Resources, 23(1), 190-204.
Coutinho, F. H., Silveira, C. B., Sebastián, M., Sánchez, P., Duarte, C. M., Vaqué, D., Gasol, J. M., & Acinas, S. G. (2023). Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. Microbiome, 11(1), 118.
Gazulla, C. R., Cabello, A. M., Sánchez, P., Gasol, J. M., Sánchez, O., & Ferrera, I. (2023). A Metagenomic and Amplicon Sequencing Combined Approach Reveals the Best Primers to Study Marine Aerobic Anoxygenic Phototrophs. Microbial Ecology.
Martinez-Sanchez, J., Castrillo, L., Jerez, D., Torramade-Moix, S., Palomo, M., Mendieta, G., Zafar, M. U., Moreno-Castaño, A. B., Sanchez, P., Badimon, J. J., Diaz-Ricart, M., Escolar, G., & Roqué, M. (2023). Antithrombotic and prohemorrhagic actions of different concentrations of apixaban in patients exposed to single and dual antiplatelet regimens. Scientific Reports, 13(1), Article 1.
Ngugi, D. K., Acinas, S. G., Sánchez, P., Gasol, J. M., Agusti, S., Karl, D. M., & Duarte, C. M. (2023). Abiotic selection of microbial genome size in the global ocean. Nature Communications, 14(1), Article 1.
Pascoal, F., Tomasino, M. P., Piredda, R., Quero, G. M., Torgo, L., Poulain, J., Galand, P. E., Fuhrman, J. A., Mitchell, A., Tinta, T., Turk Dermastia, T., Fernandez-Guerra, A., Vezzi, A., Logares, R., Malfatti, F., Endo, H., Dąbrowska, A. M., De Pascale, F., Sánchez, P., … Magalhães, C. (2023). Inter-comparison of marine microbiome sampling protocols. ISME Communications, 3(1), Article 1.
Palomo, M., Youssef, L., Ramos, A., Torramade-Moix, S., Moreno-Castaño, A. B., Martinez-Sanchez, J., Bonastre, L., Pino, M., Gomez-Ramirez, P., Martin, L., Garcia Mateos, E., Sanchez, P., Fernandez, S., Crovetto, F., Escolar, G., Carreras, E., Castro, P., Gratacos, E., Crispi, F., & Diaz-Ricart, M. (2022). Differences and similarities in endothelial and angiogenic profiles of preeclampsia and COVID-19 in pregnancy. American Journal of Obstetrics and Gynecology, S0002-9378(22)00227-7.
Paoli, L., Ruscheweyh, H.-J., Forneris, C. C., Hubrich, F., Kautsar, S., Bhushan, A., Lotti, A., Clayssen, Q., Salazar, G., Milanese, A., Carlström, C. I., Papadopoulou, C., Gehrig, D., Karasikov, M., Mustafa, H., Larralde, M., Carroll, L. M., Sánchez, P., Zayed, A. A., … Sunagawa, S. (2022). Biosynthetic potential of the global ocean microbiome. Nature, 607(7917), 111-118.
Sanz-Sáez, I., Pereira-García, C., Bravo, A. G., Trujillo, L., Pla i Ferriol, M., Capilla, M., Sánchez, P., Rodríguez Martín-Doimeadios, R. C., Acinas, S. G., & Sánchez, O. (2022). Prevalence of Heterotrophic Methylmercury Detoxifying Bacteria across Oceanic Regions. Environmental Science & Technology, 56(6), 3452-3461.
Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sánchez, P., Siren, K., Steinegger, M., Gloeckner, F. O., & Fernàndez-Guerra, A. (2022). Unifying the known and unknown microbial coding sequence space. eLife, 11, e67667.
Vernette, C., Lecubin, J., Sánchez, P., Tara Oceans Coordinators, Sunagawa, S., Delmont, T. O., Acinas, S. G., Pelletier, E., Hingamp, P., & Lescot, M. (2022). The Ocean Gene Atlas v2.0: Online exploration of the biogeography and phylogeny of plankton genes. Nucleic Acids Research, 50(W1), W516-W526.
Acinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., Royo-Llonch, M., Paoli, L., Sunagawa, S., Hingamp, P., Ogata, H., Lima-Mendez, G., Roux, S., González, J. M., Arrieta, J. M., Alam, I. S., Kamau, A., Bowler, C., Raes, J., … Gasol, J. M. (2021). Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology, 4(1), Article 1.
Royo-Llonch, M., Sánchez, P., Ruiz-González, C., Salazar, G., Pedrós-Alió, C., Sebastián, M., Labadie, K., Paoli, L., M. Ibarbalz, F., Zinger, L., Churcheward, B., Chaffron, S., Eveillard, D., Karsenti, E., Sunagawa, S., Wincker, P., Karp-Boss, L., Bowler, C., & Acinas, S. G. (2021). Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean. Nature Microbiology, 6, 1561-1574.
Obiol, A., Giner, C. R., Sánchez, P., Duarte, C. M., Acinas, S. G., & Massana, R. (2020). A metagenomic assessment of microbial eukaryotic diversity in the global ocean. Molecular Ecology Resources, 20(January), 718-731.
Royo-Llonch, M., Sánchez, P., González, J. M., Pedrós-Alió, C., & Acinas, S. G. (2020). Ecological and functional capabilities of an uncultured Kordia sp. Systematic and Applied Microbiology, 43(1), 126045.
Sanz-Sáez, I., Salazar, G., Sánchez, P., Lara, E., Royo-Llonch, M., Sà, E. L., Lucena, T., Pujalte, M. J., Vaqué, D., Duarte, C. M., Gasol, J. M., Pedrós-Alió, C., Sánchez, O., & Acinas, S. G. (2020). Diversity and distribution of marine heterotrophic bacteria from a large culture collection. BMC Microbiology, 20(1), 207.
Auladell, A., Sánchez, P., Sánchez, O., Gasol, J. M., & Ferrera, I. (2019). Long-term seasonal and interannual variability of marine aerobic anoxygenic photoheterotrophic bacteria. The ISME Journal, 13(8), 1975-1987.
Díez‐Vives, C., Nielsen, S., Sánchez, P., Palenzuela, O., Ferrera, I., Sebastián, M., Pedrós‐Alió, C., Gasol, J. M., & Acinas, S. G. (2019). Delineation of ecologically distinct units of marine Bacteroidetes in the Northwestern Mediterranean Sea. Molecular Ecology.
Huber, P., Cornejo-Castillo, F. M., Ferrera, I., Sánchez, P., Logares, R., Metz, S., Balagué, V., Acinas, S. G., Gasol, J. M., & Unrein, F. (2019). Primer design for an accurate view of picocyanobacterial community structure by using high-throughput sequencing. Applied and Environmental Microbiology, 85(7), 1-17.
Salazar, G., Paoli, L., Alberti, A., Huerta-Cepas, J., Ruscheweyh, H.-J., Cuenca, M., Field, C. M., Coelho, L. P., Cruaud, C., Engelen, S., Gregory, A. C., Labadie, K., Marec, C., Pelletier, E., Royo-Llonch, M., Roux, S., Sánchez, P., Uehara, H., Zayed, A. A., … Wincker, P. (2019). Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. Cell, 179(5), 1068-1083.
Ledoux, J. B., Frleta-Valić, M., Kipson, S., Antunes, A., Cebrian, E., Linares, C., Sánchez, P., Leblois, R., & Garrabou, J. (2018). Postglacial range expansion shaped the spatial genetic structure in a marine habitat-forming species: Implications for conservation plans in the Eastern Adriatic Sea. Journal of Biogeography, 45(12), 2645-2657.
Fridman, S., Flores-Uribe, J., Larom, S., Alalouf, O., Liran, O., Yacoby, I., Salama, F., Bailleul, B., Rappaport, F., Ziv, T., Sharon, I., Cornejo-Castillo, F. M., Philosof, A., Dupont, C. L., Sánchez, P., Acinas, S. G., Rohwer, F. L., Lindell, D., & Béjà, O. (2017). A myovirus encoding both photosystem i and II proteins enhances cyclic electron flow in infected Prochlorococcus cells. Nature Microbiology, 2(10), 1350-1357.
Mangot, J.-F., Logares, R., Sánchez, P., Latorre, F., Seeleuthner, Y., Mondy, S., Sieracki, M. E., Jaillon, O., Wincker, P., De Vargas, C., & Massana, Ramon. (2017). Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Scientific Reports, 7(1), 1-12.
Royo-Llonch, M., Ferrera, I., Cornejo-Castillo, F. M., Sánchez, P., Salazar, G., Stepanauskas, R., González, J. M., Sieracki, M. E., Speich, S., Stemmann, L., Pedrós-Alió, C., & Acinas, S. G. (2017). Exploring microdiversity in novel Kordia sp. (Bacteroidetes) with proteorhodopsin from the tropical Indian Ocean via Single Amplified Genomes. Frontiers in Microbiology, 8(JUL), 1-14.
Sebastián, M., Smith, A. F., González, J. M., Fredricks, H. F., Van Mooy, B., Koblížek, M., Brandsma, J., Koster, G., Mestre, M., Mostajir, B., Pitta, P., Postle, A. D., Sánchez, P., Gasol, J. M., Scanlan, D. J., & Chen, Y. (2016). Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. ISME Journal, 10(4), 968-978.
Lima-Mendez, G., Faust, K., Henry, N., Decelle, J., Colin, S., Carcillo, F., Chaffron, S., Ignacio-Espinosa, J. C., Roux, S., Vincent, F., Bittner, L., Darzi, Y., Wang, J., Audic, S., Berline, L., Bontempi, G., Cabello, A. M., Coppola, L., Cornejo-Castillo, F. M., … Raes, J. (2015). Determinants of community structure in the global plankton interactome. Science, 348(6237), 1262073-1262073.
Roitman, S., Flores-Uribe, J., Philosof, A., Knowles, B., Rohwer, F., Ignacio-Espinoza, J. C., Sullivan, M. B., Cornejo-Castillo, F. M., Sánchez, P., Acinas, S. G., Dupont, C. L., & Béjà, O. (2015). Closing the gaps on the viral photosystem-I psaDCAB gene organization. Environmental microbiology, 17(12), 5100-5108.
Castillo, J. J., López-Jurado, L. F., Cardona, L., Gozalbes, P., Sánchez, P., Bellido, J. J., Monzón-Argüello, C., Marco, A., Tomás, J., Fernández, G., Carreras, C., Calabuig, P., & Medina, P. (2014). Origin and dispersal routes of foreign green and Kemp’s ridley turtles in Spanish Atlantic and Mediterranean waters. Amphibia-Reptilia, 35(1), 73-86.
Sánchez, P., Ambrosio, P. P., & Flos, R. (2013). Stocking density affects Senegalese sole (Solea senegalensis , Kaup) growth independently of size dispersion, evaluated using an individual photo-identification technique. Aquaculture Research, 44(2), 231-241.
Sánchez, P., Viñas, J., Alvarado Bremer, J. R., Ambrosio, P. P., & Flos, R. (2012). Loss of genetic variability in a hatchery strain of Senegalese sole (Solea senegalensis) revealed by sequence data of the mitochondrial DNA control region and microsatellite markers. Scientia Marina, 76(2), 225-235.
Sanchez, P., Ambrosio, P. P., & Flos, R. (2010). Stocking density and sex influence individual growth of Senegalese sole (Solea senegalensis). Aquaculture, 300, 93-101.
Ambrosio, P. P., Costa, C., Sánchez, P., & Flos, R. (2008). Stocking density and its influence on shape of Senegalese sole adults. Aquacult Int, 16(4), 333-343.

Pre-prints

Sánchez, P., Sebastián, M., Pernice, M. C., Rodríguez-Martínez, R., Pesant, S., Agustí, S., Gojobori, T., Logares, R., Sala, M. M., Vaqué, D., Massana, R., Duarte, C. M., Acinas, S. G., & Gasol, J. M. (2023). Marine picoplankton metagenomes from eleven vertical profiles obtained by the Malaspina Expedition in the tropical and subtropical oceans. BioRxiv, 2023.02.06.526790.
Capo, E., Peterson, B. D., Kim, M., Jones, D. S., Acinas, S. G., Amyot, M., Bertilsson, S., Björn, E., Buck, M., Cosio, C., Elias, D., Gilmour, C., Goñi Urriza, M. S., Gu, B., Lin, H., Liu, Y.-R., McMahon, K., Moreau, J. W., Pinhassi, J., … Gionfriddo, C. (2022). A consensus protocol for the recovery of mercury methylation genes from metagenomes. BioRxiv.
Puente-Sánchez, F., Macías, L., Campbell, K. L., Royo-Llonch, M., Balagué, V., Sánchez, P., Tamames, J., Mundy, C. J., & Pedrós-Alió, C. (2022). Bacterioplankton taxa compete for iron along the early spring-summer transition in the Arctic Ocean. BioRxiv.
Paoli, L., Ruscheweyh, H.-J., Forneris, C. C., Kautsar, S., Clayssen, Q., Salazar, G., Milanese, A., Gehrig, D., Larralde, M., Carroll, L. M., Sánchez, P., Zayed, A. A., Cronin, D. R., Acinas, S. G., Bork, P., Bowler, C., Delmont, T. O., Sullivan, M. B., Wincker, P., … Sunagawa, S. (2021). Uncharted biosynthetic potential of the ocean microbiome. bioRxiv, 2021.03.24.436479.
Sanz-Sáez, I., García, C. P., Bravo, A. G., Trujillo, L., Ferriol, M. P. i, Capilla, M., Sánchez, P., Martín-Doimeadios, R. del C. R., Acinas, S. G., & Sánchez, O. (2021). Prevalence of heterotrophic methylmercury detoxifying bacteria across oceanic regions. BioRxiv, 2021.08.09.455674.
Sebastián, M., Sánchez, P., Salazar, G., Álvarez-Salgado, X. A., Reche, I., Morán, X. A. G., Sala, M. M., Duarte, C. M., Acinas, S. G., & Gasol, J. M. (2021). The quality of dissolved organic matter shapes the biogeography of the active bathypelagic microbiome. En BioRxiv (p. 2021.05.14.444136).
Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sanchez, P., Siren, K., Steinegger, M., Glöckner, F. O., & Fernandez-Guerra, A. (2021). Unifying the known and unknown microbial coding sequence space. bioRxiv, 2020.06.30.180448.
Royo-Llonch, M., Sánchez, P., Ruiz-González, C., Salazar, G., Pedrós-Alió, C., Labadie, K., Paoli, L., Coordinators, T. O., Chaffron, S., Eveillard, D., Karsenti, E., Sunagawa, S., Wincker, P., Karp-Boss, L., Bowler, C., & Acinas, S. G. (2020). Ecogenomics of key prokaryotes in the arctic ocean. bioRxiv, 2020.06.19.156794.
Acinas, S., Sánchez, P., Salazar, G., Cornejo-Castillo, F., Sebastián, M., Logares, R., Sunagawa, S., Hingamp, P., Ogata, H., Lima-Mendez, G., Roux, S., González, J., Arrieta, J., Alam, I., Kamau, A., Bowler, C., Raes, J., Pesant, S., Bork, P., … Gasol, J. (2019). Metabolic Architecture of the Deep Ocean Microbiome. bioRxiv, 635680.
Auladell, A., Sánchez, P., Sánchez, O., Gasol, J. M., & Ferrera, I. (2018). Long-term seasonality of marine photoheterotrophic bacteria reveals low cohesiveness within the different phylogroups. bioRxiv, 316059.